Variant report

Variant	rs2167246
Chromosome Location	chr4:21701301-21701302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10011822	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10018079	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1542916	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2167248	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28418516	1.00[EUR][1000 genomes]
rs28570500	1.00[EUR][1000 genomes]
rs7434957	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9997043	1.00[EUR][1000 genomes]
rs9997062	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21699600-21708400	Weak transcription	Brain Anterior Caudate	brain
2	chr4:21699800-21701400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:21699800-21701400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:21700200-21701400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:21700400-21701600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:21700400-21701800	Enhancers	Stomach Mucosa	stomach
7	chr4:21700800-21701400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:21700800-21701400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:21700800-21701400	Enhancers	Fetal Lung	lung
10	chr4:21701000-21701400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:21701000-21701400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:21701200-21701400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr4:21701200-21701400	Enhancers	H9 Cell Line	embryonic stem cell
14	chr4:21701200-21701400	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
15	chr4:21701200-21701600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr4:21701200-21701600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:21701200-21701600	Enhancers	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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