Variant report

Variant	rs1542916
Chromosome Location	chr4:21710750-21710751
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10011822	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10018079	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2167246	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2167248	1.00[EUR][1000 genomes]
rs28418516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28570500	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7434957	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9997043	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9997062	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21710200-21711600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:21710200-21711600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:21710400-21711600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:21710400-21711600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:21710400-21711600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:21710400-21711800	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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