Variant report

Variant	rs10018501
Chromosome Location	chr4:94004563-94004564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:94003469..94006047-chr4:94006139..94009104,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10021148	0.91[ASN][1000 genomes]
rs10440373	0.86[EUR][1000 genomes]
rs11731811	0.89[EUR][1000 genomes]
rs11940919	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11940921	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2089820	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2271385	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2870658	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3843409	0.87[EUR][1000 genomes]
rs3857063	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs3857064	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs3913624	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4303949	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4376113	0.92[EUR][1000 genomes]
rs4475115	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4502650	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4565050	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4615143	0.95[ASN][1000 genomes]
rs4693305	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6836646	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6852513	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6852692	0.82[ASN][1000 genomes]
rs6857940	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7680942	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7699510	0.94[ASN][1000 genomes]
rs9996056	0.91[ASN][1000 genomes]
rs9998068	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv931937	chr4:93869856-94155348	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1011740	chr4:93904073-94073963	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3374790	chr4:93959718-94063251	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv999660	chr4:93982635-94107714	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:93999400-94005800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:94002200-94006000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:94003400-94005600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:94003600-94005400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:94004400-94004600	Enhancers	HUES48 Cell Line	embryonic stem cell

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