Variant report

Variant	rs9996056
Chromosome Location	chr4:94038181-94038182
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10013748	0.81[EUR][1000 genomes]
rs10018501	0.91[ASN][1000 genomes]
rs10021088	0.80[EUR][1000 genomes]
rs10021148	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022163	0.85[EUR][1000 genomes]
rs10030263	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10032153	0.85[EUR][1000 genomes]
rs1032805	0.84[EUR][1000 genomes]
rs10440372	0.81[EUR][1000 genomes]
rs10856899	0.81[EUR][1000 genomes]
rs11097358	0.80[EUR][1000 genomes]
rs1160685	0.80[EUR][1000 genomes]
rs1160686	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11940919	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11940921	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12499828	0.81[EUR][1000 genomes]
rs12511683	0.84[EUR][1000 genomes]
rs12651392	0.83[EUR][1000 genomes]
rs13113786	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13115341	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13117401	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13133284	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13142145	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13149430	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1354296	0.84[EUR][1000 genomes]
rs1393804	0.86[EUR][1000 genomes]
rs1503212	0.84[EUR][1000 genomes]
rs1503213	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1503214	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1503216	0.84[EUR][1000 genomes]
rs1511294	0.83[EUR][1000 genomes]
rs1566743	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1566744	0.85[EUR][1000 genomes]
rs17020132	0.81[EUR][1000 genomes]
rs17264265	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1912718	0.83[EUR][1000 genomes]
rs2089820	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2271385	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28392586	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28448801	0.80[EUR][1000 genomes]
rs2870658	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2870681	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2870682	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2904475	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3857063	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3857064	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3913624	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4274812	0.81[EUR][1000 genomes]
rs4403008	0.81[EUR][1000 genomes]
rs4441725	0.86[EUR][1000 genomes]
rs4475115	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4502650	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4574371	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4615143	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4634186	0.81[EUR][1000 genomes]
rs4692978	0.85[EUR][1000 genomes]
rs4693305	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6814422	0.80[EUR][1000 genomes]
rs6825233	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6838743	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6843540	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6844422	0.85[EUR][1000 genomes]
rs7661153	0.83[EUR][1000 genomes]
rs7661294	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7680942	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7699510	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9998068	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv931937	chr4:93869856-94155348	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1011740	chr4:93904073-94073963	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3374790	chr4:93959718-94063251	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv999660	chr4:93982635-94107714	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1013255	chr4:94027129-94462345	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94029000-94038800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:94030800-94039800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:94033800-94038400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:94035800-94038800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:94037400-94039400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:94037400-94040200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr4:94037800-94040200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr4:94038000-94038200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:94038000-94040000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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