Variant report

Variant	rs6825233
Chromosome Location	chr4:94028898-94028899
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10013748	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10021148	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10030263	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10032153	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10440323	0.82[EUR][1000 genomes]
rs10440373	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1160686	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11940919	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11940921	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12499828	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12506519	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13113786	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13115341	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13117401	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13133284	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13142145	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13149430	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1393804	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1503214	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1511296	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1566743	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17020132	0.82[EUR][1000 genomes]
rs17264265	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1912718	0.84[EUR][1000 genomes]
rs2089820	0.82[EUR][1000 genomes]
rs2870658	0.80[EUR][1000 genomes]
rs2870681	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2870682	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2904475	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3846290	0.98[ASN][1000 genomes]
rs4303948	0.82[EUR][1000 genomes]
rs4303949	0.86[ASN][1000 genomes]
rs4403008	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4441725	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4502650	0.82[EUR][1000 genomes]
rs4574371	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4615143	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4634186	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4693305	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6814422	0.83[EUR][1000 genomes]
rs6836646	0.97[ASN][1000 genomes]
rs6838743	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6843540	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7661294	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7680942	0.81[EUR][1000 genomes]
rs7686545	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7699510	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9996056	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9998068	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv931937	chr4:93869856-94155348	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1011740	chr4:93904073-94073963	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3374790	chr4:93959718-94063251	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv999660	chr4:93982635-94107714	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1013255	chr4:94027129-94462345	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94008000-94037400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:94025200-94033600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:94028800-94029000	Enhancers	H9 Cell Line	embryonic stem cell
4	chr4:94028800-94029200	Enhancers	Cortex derived primary cultured neurospheres	brain

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