Variant report

Variant	rs2870681
Chromosome Location	chr4:94073948-94073949
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10013748	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10021148	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10030263	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10032153	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10440373	0.83[ASN][1000 genomes]
rs1160686	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11940919	0.81[EUR][1000 genomes]
rs11940921	0.81[EUR][1000 genomes]
rs12499828	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12506519	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13113786	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13115341	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13117401	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13133284	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13142145	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13149430	0.88[EUR][1000 genomes]
rs1393804	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1503214	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1511296	0.82[EUR][1000 genomes]
rs1566743	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17020132	0.85[EUR][1000 genomes]
rs17264265	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1912718	0.87[EUR][1000 genomes]
rs2271385	0.85[EUR][1000 genomes]
rs28392586	0.81[AMR][1000 genomes]
rs2870657	0.82[EUR][1000 genomes]
rs2870682	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2904475	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846290	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3857063	0.85[EUR][1000 genomes]
rs3857064	0.84[EUR][1000 genomes]
rs3913624	0.85[EUR][1000 genomes]
rs4403008	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4441725	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4502650	0.81[EUR][1000 genomes]
rs4574371	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4615143	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4634186	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4693305	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6814422	0.84[EUR][1000 genomes]
rs6825233	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6836646	0.81[AFR][1000 genomes]
rs6838743	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6843540	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661294	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686545	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7699510	0.87[EUR][1000 genomes]
rs9996056	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9998068	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv931937	chr4:93869856-94155348	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1011740	chr4:93904073-94073963	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv999660	chr4:93982635-94107714	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1013255	chr4:94027129-94462345	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1002664	chr4:94045490-94107687	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3450455	chr4:94047592-94111856	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv461588	chr4:94049584-94106172	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv594900	chr4:94049584-94106172	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv818254	chr4:94049584-94106172	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3331917	chr4:94063161-94093647	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3374701	chr4:94066329-94107927	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94066400-94074400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:94069400-94078800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:94069600-94079000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:94069600-94079000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:94070600-94074600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:94070800-94088800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:94071200-94074400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:94073000-94074200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:94073200-94074200	Weak transcription	Fetal Intestine Large	intestine

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