Variant report

Variant	rs6814422
Chromosome Location	chr4:93981609-93981610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10021148	0.80[EUR][1000 genomes]
rs10030263	0.85[EUR][1000 genomes]
rs10032153	0.87[EUR][1000 genomes]
rs11097354	0.83[EUR][1000 genomes]
rs1160686	0.85[EUR][1000 genomes]
rs12507987	0.91[ASN][1000 genomes]
rs13108488	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13109062	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13113786	0.85[EUR][1000 genomes]
rs13115341	0.85[EUR][1000 genomes]
rs13117401	0.84[EUR][1000 genomes]
rs13133284	0.86[EUR][1000 genomes]
rs13135367	0.81[ASN][1000 genomes]
rs13138538	0.93[ASN][1000 genomes]
rs13142145	0.84[EUR][1000 genomes]
rs13149430	0.80[EUR][1000 genomes]
rs1393804	0.82[EUR][1000 genomes]
rs1456359	0.88[CEU][hapmap]
rs1503214	0.85[EUR][1000 genomes]
rs1566743	0.84[EUR][1000 genomes]
rs17020132	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17264265	0.85[EUR][1000 genomes]
rs17328778	0.84[EUR][1000 genomes]
rs1912718	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2870657	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2870681	0.84[EUR][1000 genomes]
rs2870682	0.84[EUR][1000 genomes]
rs2904475	0.85[EUR][1000 genomes]
rs34686894	0.93[ASN][1000 genomes]
rs36053546	0.83[EUR][1000 genomes]
rs4441725	0.82[EUR][1000 genomes]
rs4574371	0.85[EUR][1000 genomes]
rs4615143	0.80[EUR][1000 genomes]
rs6811974	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6825233	0.83[EUR][1000 genomes]
rs6838743	0.84[EUR][1000 genomes]
rs6843540	0.85[EUR][1000 genomes]
rs7661294	0.85[EUR][1000 genomes]
rs7670430	0.86[EUR][1000 genomes]
rs9996056	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916371	chr4:93673026-93994807	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv879611	chr4:93707288-93987251	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv997640	chr4:93790604-93982695	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879614	chr4:93869564-93989892	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv931937	chr4:93869856-94155348	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1011740	chr4:93904073-94073963	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3374790	chr4:93959718-94063251	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1797112	chr4:93974179-93993208	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:93974400-93988000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:93977200-93982600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:93977400-93982800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:93980400-93982800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links