Variant report

Variant	rs3846290
Chromosome Location	chr4:94034560-94034561
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10013748	0.93[ASN][1000 genomes]
rs10030263	0.81[EUR][1000 genomes]
rs10440373	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1160686	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12499828	0.97[ASN][1000 genomes]
rs12506519	0.94[ASN][1000 genomes]
rs13108488	0.83[EUR][1000 genomes]
rs13109062	0.83[EUR][1000 genomes]
rs13113786	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13115341	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13117401	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13133284	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13138538	0.83[EUR][1000 genomes]
rs13142145	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1503214	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1511296	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1566743	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17264265	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2870681	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2870682	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2904475	0.82[EUR][1000 genomes]
rs4303949	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4403008	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4574371	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4634186	0.95[ASN][1000 genomes]
rs6825233	0.98[ASN][1000 genomes]
rs6836646	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6838743	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6843540	0.84[EUR][1000 genomes]
rs6852513	0.87[EUR][1000 genomes]
rs7661294	0.82[EUR][1000 genomes]
rs7686545	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv931937	chr4:93869856-94155348	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1011740	chr4:93904073-94073963	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3374790	chr4:93959718-94063251	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv999660	chr4:93982635-94107714	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1013255	chr4:94027129-94462345	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94008000-94037400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:94029000-94038800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:94029400-94037800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr4:94029600-94038000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:94030800-94039800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:94033600-94035800	Strong transcription	H1 Cell Line	embryonic stem cell
7	chr4:94033800-94038400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:94034200-94038000	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links