Variant report

Variant	rs10018974
Chromosome Location	chr4:142139864-142139865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10023024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10033681	0.95[AFR][1000 genomes]
rs28662062	0.95[AFR][1000 genomes]
rs9999560	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757959	chr4:142065661-142367951	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759287	chr4:142065661-142367951	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142133800-142141400	Weak transcription	Brain Hippocampus Middle	brain
2	chr4:142135200-142141200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:142136600-142141600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:142137000-142141400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:142137200-142141000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr4:142137400-142141400	Weak transcription	Brain Substantia Nigra	brain
7	chr4:142137600-142141400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:142137600-142141600	Weak transcription	Fetal Lung	lung
9	chr4:142138000-142141000	Weak transcription	Fetal Heart	heart
10	chr4:142138000-142141600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr4:142138400-142141400	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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