Variant report

Variant	rs28662062
Chromosome Location	chr4:142157257-142157258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:142152209..142155959-chr4:142156950..142159501,4	K562	blood:
2	chr4:142147670..142151486-chr4:142153035..142157398,7	K562	blood:
3	chr4:142151524..142153740-chr4:142155253..142157789,3	K562	blood:
4	chr4:142156458..142159953-chr4:142166244..142169936,4	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10018974	0.95[AFR][1000 genomes]
rs10023024	0.95[AFR][1000 genomes]
rs10033681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17007094	1.00[AMR][1000 genomes]
rs56103800	1.00[AMR][1000 genomes]
rs57331722	1.00[AMR][1000 genomes]
rs58861544	1.00[AMR][1000 genomes]
rs73849900	1.00[AMR][1000 genomes]
rs73852907	1.00[AMR][1000 genomes]
rs73852910	1.00[AMR][1000 genomes]
rs73852914	1.00[AMR][1000 genomes]
rs9999560	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757959	chr4:142065661-142367951	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759287	chr4:142065661-142367951	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142142600-142159400	Weak transcription	Spleen	Spleen
2	chr4:142143800-142158800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:142144000-142158000	Strong transcription	HSMM	muscle
4	chr4:142144800-142157600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:142144800-142157800	Strong transcription	Dnd41	blood
6	chr4:142144800-142158000	Strong transcription	Primary T cells from cord blood	blood
7	chr4:142145000-142158000	Weak transcription	Small Intestine	intestine
8	chr4:142149400-142158000	Strong transcription	Fetal Muscle Trunk	muscle
9	chr4:142151000-142157400	Strong transcription	Left Ventricle	heart
10	chr4:142151400-142166600	Weak transcription	NHLF	lung
11	chr4:142151800-142158600	Weak transcription	A549	lung
12	chr4:142153400-142159000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr4:142154400-142158600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:142155200-142158000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr4:142155200-142158000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr4:142155200-142158800	Weak transcription	Fetal Intestine Small	intestine
17	chr4:142155200-142158800	Weak transcription	Psoas Muscle	Psoas
18	chr4:142155200-142160200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:142155400-142157800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr4:142155400-142157800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr4:142155400-142158000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr4:142155400-142158600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr4:142155400-142158600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr4:142155400-142158600	Weak transcription	Pancreas	Pancrea
25	chr4:142155400-142160400	Weak transcription	Fetal Lung	lung
26	chr4:142155400-142167400	Weak transcription	K562	blood
27	chr4:142155600-142157800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr4:142155600-142157800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr4:142155600-142157800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr4:142155600-142157800	Weak transcription	Fetal Kidney	kidney
31	chr4:142155600-142158000	Weak transcription	Hela-S3	cervix
32	chr4:142155600-142158200	Weak transcription	Brain Substantia Nigra	brain
33	chr4:142155600-142158200	Weak transcription	NHEK	skin
34	chr4:142155600-142159000	Weak transcription	Brain Germinal Matrix	brain
35	chr4:142155800-142157400	Weak transcription	Fetal Brain Male	brain
36	chr4:142155800-142157400	Weak transcription	HepG2	liver
37	chr4:142155800-142157600	Weak transcription	HMEC	breast
38	chr4:142156000-142166800	Weak transcription	NHDF-Ad	bronchial
39	chr4:142156200-142158000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr4:142156200-142158600	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr4:142156200-142158600	Weak transcription	HUVEC	blood vessel
42	chr4:142156400-142158000	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr4:142156400-142158000	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr4:142156400-142158000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr4:142156400-142158000	Weak transcription	Colon Smooth Muscle	Colon
46	chr4:142156400-142158200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr4:142156400-142158200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr4:142156400-142158400	Weak transcription	Right Ventricle	heart
49	chr4:142156400-142159400	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr4:142156600-142158200	Weak transcription	H1 Cell Line	embryonic stem cell

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