Variant report

Variant	rs73849900
Chromosome Location	chr4:142337996-142337997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10033681	1.00[AMR][1000 genomes]
rs17007094	1.00[AMR][1000 genomes]
rs17007403	1.00[AMR][1000 genomes]
rs28662062	1.00[AMR][1000 genomes]
rs56103800	1.00[AMR][1000 genomes]
rs56108079	1.00[AMR][1000 genomes]
rs56286019	1.00[AMR][1000 genomes]
rs57331722	1.00[AMR][1000 genomes]
rs58861544	1.00[AMR][1000 genomes]
rs60514765	1.00[AMR][1000 genomes]
rs71608441	1.00[AMR][1000 genomes]
rs73849711	1.00[AMR][1000 genomes]
rs73849760	1.00[AMR][1000 genomes]
rs73849761	1.00[AMR][1000 genomes]
rs73849768	1.00[AMR][1000 genomes]
rs73849769	1.00[AMR][1000 genomes]
rs73849771	1.00[AMR][1000 genomes]
rs73849774	1.00[AMR][1000 genomes]
rs73849775	1.00[AMR][1000 genomes]
rs73849779	1.00[AMR][1000 genomes]
rs73849786	1.00[AMR][1000 genomes]
rs73852907	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73852910	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73852914	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757959	chr4:142065661-142367951	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759287	chr4:142065661-142367951	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142332000-142338000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:142332400-142338000	Weak transcription	Aorta	Aorta
3	chr4:142336400-142339000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:142336400-142339200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:142336600-142338600	Enhancers	NHLF	lung
6	chr4:142336800-142338000	Weak transcription	Ovary	ovary
7	chr4:142336800-142338600	Enhancers	Fetal Lung	lung
8	chr4:142336800-142339000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:142336800-142339000	Enhancers	NHDF-Ad	bronchial
10	chr4:142337000-142338000	Weak transcription	Fetal Stomach	stomach
11	chr4:142337000-142339200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:142337200-142339000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr4:142337400-142338800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:142337400-142339000	Enhancers	Osteobl	bone
15	chr4:142337600-142338400	Weak transcription	Stomach Smooth Muscle	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links