Variant report

Variant	rs71608441
Chromosome Location	chr4:142383569-142383570
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17007094	1.00[AMR][1000 genomes]
rs17007403	1.00[AMR][1000 genomes]
rs56103800	1.00[AMR][1000 genomes]
rs56108079	1.00[AMR][1000 genomes]
rs56286019	1.00[AMR][1000 genomes]
rs57331722	1.00[AMR][1000 genomes]
rs58861544	1.00[AMR][1000 genomes]
rs60514765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849761	1.00[AMR][1000 genomes]
rs73849768	1.00[AMR][1000 genomes]
rs73849769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849774	1.00[AMR][1000 genomes]
rs73849775	1.00[AMR][1000 genomes]
rs73849779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849900	1.00[AMR][1000 genomes]
rs73852907	1.00[AMR][1000 genomes]
rs73852910	1.00[AMR][1000 genomes]
rs73852914	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880172	chr4:142355535-142565089	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880173	chr4:142355535-142666106	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142377200-142386200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:142383400-142383800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:142383400-142383800	Enhancers	HMEC	breast
4	chr4:142383400-142383800	Enhancers	NHDF-Ad	bronchial
5	chr4:142383400-142384000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:142383400-142384000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:142383400-142384000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:142383400-142384000	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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