Variant report

Variant	rs56103800
Chromosome Location	chr4:142329318-142329319
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10033681	1.00[AMR][1000 genomes]
rs17007094	1.00[AMR][1000 genomes]
rs17007403	1.00[AMR][1000 genomes]
rs28662062	1.00[AMR][1000 genomes]
rs56108079	1.00[AMR][1000 genomes]
rs56286019	1.00[AMR][1000 genomes]
rs57331722	1.00[AMR][1000 genomes]
rs58861544	1.00[AMR][1000 genomes]
rs60514765	1.00[AMR][1000 genomes]
rs71608441	1.00[AMR][1000 genomes]
rs73849711	1.00[AMR][1000 genomes]
rs73849760	1.00[AMR][1000 genomes]
rs73849761	1.00[AMR][1000 genomes]
rs73849768	1.00[AMR][1000 genomes]
rs73849769	1.00[AMR][1000 genomes]
rs73849771	1.00[AMR][1000 genomes]
rs73849774	1.00[AMR][1000 genomes]
rs73849775	1.00[AMR][1000 genomes]
rs73849779	1.00[AMR][1000 genomes]
rs73849786	1.00[AMR][1000 genomes]
rs73849900	1.00[AMR][1000 genomes]
rs73852907	1.00[AMR][1000 genomes]
rs73852910	1.00[AMR][1000 genomes]
rs73852914	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757959	chr4:142065661-142367951	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759287	chr4:142065661-142367951	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv880171	chr4:142177058-142334172	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142327800-142336200	Weak transcription	Fetal Stomach	stomach
2	chr4:142328400-142331600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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