Variant report
| Variant | rs73849771 |
|---|---|
| Chromosome Location | chr4:142440375-142440376 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs17007403 | 1.00[AMR][1000 genomes] |
| rs56103800 | 1.00[AMR][1000 genomes] |
| rs56108079 | 1.00[AMR][1000 genomes] |
| rs56286019 | 1.00[AMR][1000 genomes] |
| rs57331722 | 1.00[AMR][1000 genomes] |
| rs60514765 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61098551 | 1.00[AMR][1000 genomes] |
| rs71608441 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73849711 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73849760 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73849761 | 1.00[AMR][1000 genomes] |
| rs73849768 | 1.00[AMR][1000 genomes] |
| rs73849769 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73849774 | 1.00[AMR][1000 genomes] |
| rs73849775 | 1.00[AMR][1000 genomes] |
| rs73849779 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73849786 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73849801 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73849900 | 1.00[AMR][1000 genomes] |
| rs73852907 | 1.00[AMR][1000 genomes] |
| rs73852910 | 1.00[AMR][1000 genomes] |
| rs73852914 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv880172 | chr4:142355535-142565089 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv880173 | chr4:142355535-142666106 | Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830094 | chr4:142411738-142567788 | Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | esv3401979 | chr4:142434442-142803321 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv520477 | chr4:142440271-142444108 | ZNF genes & repeats Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:142435400-142443200 | Weak transcription | Aorta | Aorta |
| 2 | chr4:142438400-142443200 | Weak transcription | Pancreas | Pancrea |
