Variant report

Variant	rs73852907
Chromosome Location	chr4:142352266-142352267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10033681	1.00[AMR][1000 genomes]
rs11938981	1.00[EUR][1000 genomes]
rs17007094	1.00[AMR][1000 genomes]
rs17007403	1.00[AMR][1000 genomes]
rs17007425	1.00[EUR][1000 genomes]
rs28662062	1.00[AMR][1000 genomes]
rs56103800	1.00[AMR][1000 genomes]
rs56108079	1.00[AMR][1000 genomes]
rs56286019	1.00[AMR][1000 genomes]
rs57331722	1.00[AMR][1000 genomes]
rs57470227	1.00[EUR][1000 genomes]
rs58861544	1.00[AMR][1000 genomes]
rs60080476	1.00[EUR][1000 genomes]
rs60514765	1.00[AMR][1000 genomes]
rs71608441	1.00[AMR][1000 genomes]
rs72615929	1.00[EUR][1000 genomes]
rs72615930	1.00[EUR][1000 genomes]
rs72615931	1.00[EUR][1000 genomes]
rs72615932	1.00[EUR][1000 genomes]
rs72615934	1.00[EUR][1000 genomes]
rs72615935	1.00[EUR][1000 genomes]
rs72615936	1.00[EUR][1000 genomes]
rs72615953	1.00[EUR][1000 genomes]
rs72615954	1.00[EUR][1000 genomes]
rs72615955	1.00[EUR][1000 genomes]
rs72615956	1.00[EUR][1000 genomes]
rs72615957	1.00[EUR][1000 genomes]
rs73849711	1.00[AMR][1000 genomes]
rs73849760	1.00[AMR][1000 genomes]
rs73849761	1.00[AMR][1000 genomes]
rs73849768	1.00[AMR][1000 genomes]
rs73849769	1.00[AMR][1000 genomes]
rs73849771	1.00[AMR][1000 genomes]
rs73849774	1.00[AMR][1000 genomes]
rs73849775	1.00[AMR][1000 genomes]
rs73849779	1.00[AMR][1000 genomes]
rs73849786	1.00[AMR][1000 genomes]
rs73849900	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73852908	0.81[AFR][1000 genomes]
rs73852910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73852914	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9790756	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757959	chr4:142065661-142367951	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759287	chr4:142065661-142367951	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142346600-142353200	Weak transcription	Osteobl	bone
2	chr4:142349000-142353000	Enhancers	Fetal Heart	heart
3	chr4:142349200-142353200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:142349400-142352600	Weak transcription	NHDF-Ad	bronchial
5	chr4:142349600-142353000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:142349600-142353400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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