Variant report
| Variant | rs17007094 |
|---|---|
| Chromosome Location | chr4:142213756-142213757 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000238695 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10033681 | 1.00[AMR][1000 genomes] |
| rs28662062 | 1.00[AMR][1000 genomes] |
| rs56103800 | 1.00[AMR][1000 genomes] |
| rs56108079 | 1.00[AMR][1000 genomes] |
| rs56286019 | 1.00[AMR][1000 genomes] |
| rs57331722 | 1.00[AMR][1000 genomes] |
| rs58861544 | 1.00[AMR][1000 genomes] |
| rs71608441 | 1.00[AMR][1000 genomes] |
| rs73849711 | 1.00[AMR][1000 genomes] |
| rs73849760 | 1.00[AMR][1000 genomes] |
| rs73849761 | 1.00[AMR][1000 genomes] |
| rs73849900 | 1.00[AMR][1000 genomes] |
| rs73852907 | 1.00[AMR][1000 genomes] |
| rs73852910 | 1.00[AMR][1000 genomes] |
| rs73852914 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2757959 | chr4:142065661-142367951 | Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | esv2759287 | chr4:142065661-142367951 | Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv880171 | chr4:142177058-142334172 | Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
