Variant report

Variant	rs58861544
Chromosome Location	chr4:142196979-142196980
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10033681	1.00[AMR][1000 genomes]
rs17007094	1.00[AMR][1000 genomes]
rs28662062	1.00[AMR][1000 genomes]
rs56103800	1.00[AMR][1000 genomes]
rs57331722	1.00[AMR][1000 genomes]
rs71608441	1.00[AMR][1000 genomes]
rs73849711	1.00[AMR][1000 genomes]
rs73849900	1.00[AMR][1000 genomes]
rs73852907	1.00[AMR][1000 genomes]
rs73852910	1.00[AMR][1000 genomes]
rs73852914	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757959	chr4:142065661-142367951	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759287	chr4:142065661-142367951	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv880171	chr4:142177058-142334172	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142196200-142198200	Enhancers	NH-A	brain
2	chr4:142196400-142197000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:142196400-142197000	Enhancers	HSMMtube	muscle
4	chr4:142196400-142197200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:142196400-142197400	Enhancers	NHDF-Ad	bronchial
6	chr4:142196400-142197600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:142196400-142197800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr4:142196400-142198000	Enhancers	HSMM	muscle
9	chr4:142196400-142198000	Enhancers	Osteobl	bone
10	chr4:142196600-142197000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:142196600-142197200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:142196600-142197400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:142196600-142197600	Enhancers	Primary hematopoietic stem cells	blood
14	chr4:142196600-142197600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:142196600-142197800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:142196800-142197200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:142196800-142197200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr4:142196800-142197400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:142196800-142197600	Enhancers	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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