Variant report

Variant	rs73852914
Chromosome Location	chr4:142358573-142358574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10033681	1.00[AMR][1000 genomes]
rs17007094	1.00[AMR][1000 genomes]
rs17007403	1.00[AMR][1000 genomes]
rs28662062	1.00[AMR][1000 genomes]
rs56103800	1.00[AMR][1000 genomes]
rs56108079	1.00[AMR][1000 genomes]
rs56286019	1.00[AMR][1000 genomes]
rs57331722	1.00[AMR][1000 genomes]
rs58861544	1.00[AMR][1000 genomes]
rs60514765	1.00[AMR][1000 genomes]
rs71608441	1.00[AMR][1000 genomes]
rs73849711	1.00[AMR][1000 genomes]
rs73849760	1.00[AMR][1000 genomes]
rs73849761	1.00[AMR][1000 genomes]
rs73849768	1.00[AMR][1000 genomes]
rs73849769	1.00[AMR][1000 genomes]
rs73849771	1.00[AMR][1000 genomes]
rs73849774	1.00[AMR][1000 genomes]
rs73849775	1.00[AMR][1000 genomes]
rs73849779	1.00[AMR][1000 genomes]
rs73849786	1.00[AMR][1000 genomes]
rs73849900	1.00[AMR][1000 genomes]
rs73852907	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73852910	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757959	chr4:142065661-142367951	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759287	chr4:142065661-142367951	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv880172	chr4:142355535-142565089	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv880173	chr4:142355535-142666106	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142354200-142358600	Weak transcription	NHLF	lung
2	chr4:142354200-142359200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:142357200-142359200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:142357800-142359000	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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