Variant report

Variant	rs17007403
Chromosome Location	chr4:142463440-142463441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:142457149..142460025-chr4:142460806..142464017,3	K562	blood:
2	chr4:142462900..142464595-chr4:142480109..142482608,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs17007289	1.00[EUR][1000 genomes]
rs17007294	1.00[EUR][1000 genomes]
rs17007297	1.00[EUR][1000 genomes]
rs17007300	1.00[EUR][1000 genomes]
rs17007330	1.00[EUR][1000 genomes]
rs17007343	1.00[EUR][1000 genomes]
rs17007350	1.00[EUR][1000 genomes]
rs17007364	1.00[EUR][1000 genomes]
rs17007434	1.00[EUR][1000 genomes]
rs17007476	1.00[EUR][1000 genomes]
rs17007498	1.00[EUR][1000 genomes]
rs17007503	1.00[EUR][1000 genomes]
rs28541643	1.00[EUR][1000 genomes]
rs4956296	1.00[EUR][1000 genomes]
rs4956382	1.00[EUR][1000 genomes]
rs56103800	1.00[AMR][1000 genomes]
rs56108079	1.00[AMR][1000 genomes]
rs56111938	1.00[AMR][1000 genomes]
rs56286019	1.00[AMR][1000 genomes]
rs56684354	1.00[EUR][1000 genomes]
rs56736690	1.00[EUR][1000 genomes]
rs56940882	1.00[EUR][1000 genomes]
rs57331722	1.00[AMR][1000 genomes]
rs58221817	1.00[EUR][1000 genomes]
rs58708839	1.00[EUR][1000 genomes]
rs59129365	1.00[EUR][1000 genomes]
rs59652905	1.00[EUR][1000 genomes]
rs60497076	1.00[EUR][1000 genomes]
rs60514765	1.00[AMR][1000 genomes]
rs60744814	1.00[EUR][1000 genomes]
rs61001905	1.00[EUR][1000 genomes]
rs61098551	1.00[AMR][1000 genomes]
rs61484146	1.00[EUR][1000 genomes]
rs61651334	1.00[EUR][1000 genomes]
rs6843942	1.00[EUR][1000 genomes]
rs71608441	1.00[AMR][1000 genomes]
rs72940636	1.00[EUR][1000 genomes]
rs72940637	1.00[EUR][1000 genomes]
rs72940639	1.00[EUR][1000 genomes]
rs72940641	1.00[EUR][1000 genomes]
rs72940643	1.00[EUR][1000 genomes]
rs72940644	1.00[EUR][1000 genomes]
rs72940648	1.00[EUR][1000 genomes]
rs72940682	1.00[EUR][1000 genomes]
rs73849711	1.00[AMR][1000 genomes]
rs73849760	1.00[AMR][1000 genomes]
rs73849761	1.00[AMR][1000 genomes]
rs73849768	1.00[AMR][1000 genomes]
rs73849769	1.00[AMR][1000 genomes]
rs73849771	1.00[AMR][1000 genomes]
rs73849774	1.00[AMR][1000 genomes]
rs73849775	1.00[AMR][1000 genomes]
rs73849779	1.00[AMR][1000 genomes]
rs73849784	1.00[EUR][1000 genomes]
rs73849786	1.00[AMR][1000 genomes]
rs73849801	1.00[AMR][1000 genomes]
rs73849900	1.00[AMR][1000 genomes]
rs73852907	1.00[AMR][1000 genomes]
rs73852910	1.00[AMR][1000 genomes]
rs73852914	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880172	chr4:142355535-142565089	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880173	chr4:142355535-142666106	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830094	chr4:142411738-142567788	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3401979	chr4:142434442-142803321	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv526989	chr4:142444108-142501053	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1018949	chr4:142451823-142732365	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142461200-142464000	Enhancers	Osteobl	bone
2	chr4:142461800-142463800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:142461800-142463800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:142461800-142464400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:142462200-142463800	Enhancers	NHDF-Ad	bronchial
6	chr4:142462600-142463600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:142462600-142463600	Enhancers	NHLF	lung
8	chr4:142462800-142463600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:142463200-142463600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr4:142463400-142464000	Enhancers	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links