Variant report

Variant	rs4956382
Chromosome Location	chr4:142390755-142390756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs17007289	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17007294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17007297	1.00[EUR][1000 genomes]
rs17007300	1.00[EUR][1000 genomes]
rs17007330	1.00[EUR][1000 genomes]
rs17007343	1.00[EUR][1000 genomes]
rs17007350	1.00[EUR][1000 genomes]
rs17007364	1.00[EUR][1000 genomes]
rs17007403	1.00[EUR][1000 genomes]
rs17007434	1.00[EUR][1000 genomes]
rs17007476	1.00[EUR][1000 genomes]
rs17007498	1.00[EUR][1000 genomes]
rs17007503	1.00[EUR][1000 genomes]
rs28541643	1.00[EUR][1000 genomes]
rs4956296	1.00[EUR][1000 genomes]
rs56684354	1.00[EUR][1000 genomes]
rs56940882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58221817	1.00[EUR][1000 genomes]
rs58708839	1.00[EUR][1000 genomes]
rs59652905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60497076	1.00[EUR][1000 genomes]
rs60744814	1.00[EUR][1000 genomes]
rs61001905	1.00[EUR][1000 genomes]
rs61484146	1.00[EUR][1000 genomes]
rs61651334	1.00[EUR][1000 genomes]
rs6843942	1.00[EUR][1000 genomes]
rs72940636	1.00[EUR][1000 genomes]
rs72940637	1.00[EUR][1000 genomes]
rs72940639	1.00[EUR][1000 genomes]
rs72940641	1.00[EUR][1000 genomes]
rs72940643	1.00[EUR][1000 genomes]
rs72940644	1.00[EUR][1000 genomes]
rs72940648	1.00[EUR][1000 genomes]
rs72940682	1.00[EUR][1000 genomes]
rs73849784	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880172	chr4:142355535-142565089	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880173	chr4:142355535-142666106	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142385800-142407600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:142390200-142390800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:142390400-142391000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:142390400-142391000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr4:142390600-142391200	Enhancers	Osteobl	bone
6	chr4:142390600-142394000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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