Variant report

Variant	rs17007300
Chromosome Location	chr4:142408002-142408003
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs17007289	1.00[EUR][1000 genomes]
rs17007294	1.00[EUR][1000 genomes]
rs17007297	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17007330	1.00[EUR][1000 genomes]
rs17007343	1.00[EUR][1000 genomes]
rs17007350	1.00[EUR][1000 genomes]
rs17007364	1.00[EUR][1000 genomes]
rs17007403	1.00[EUR][1000 genomes]
rs17007434	1.00[EUR][1000 genomes]
rs17007476	1.00[EUR][1000 genomes]
rs17007498	1.00[EUR][1000 genomes]
rs17007503	1.00[EUR][1000 genomes]
rs28541643	1.00[EUR][1000 genomes]
rs4956296	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4956379	0.85[AMR][1000 genomes]
rs4956382	1.00[EUR][1000 genomes]
rs4956383	0.85[AMR][1000 genomes]
rs56684354	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56736690	1.00[EUR][1000 genomes]
rs56940882	1.00[EUR][1000 genomes]
rs57502347	0.85[AMR][1000 genomes]
rs58221817	1.00[EUR][1000 genomes]
rs58708839	1.00[EUR][1000 genomes]
rs59129365	1.00[EUR][1000 genomes]
rs59652905	1.00[EUR][1000 genomes]
rs60272797	0.85[AMR][1000 genomes]
rs60497076	1.00[EUR][1000 genomes]
rs60744814	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61001905	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61484146	1.00[EUR][1000 genomes]
rs61651334	1.00[EUR][1000 genomes]
rs6830079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6843942	1.00[EUR][1000 genomes]
rs72940626	0.85[AMR][1000 genomes]
rs72940633	0.85[AMR][1000 genomes]
rs72940636	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72940637	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72940639	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72940641	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72940643	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72940644	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72940648	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72940653	0.85[AMR][1000 genomes]
rs72940673	0.85[AMR][1000 genomes]
rs72940682	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72942598	0.85[AMR][1000 genomes]
rs72942601	0.85[AMR][1000 genomes]
rs73849784	1.00[EUR][1000 genomes]
rs7692579	0.85[AMR][1000 genomes]
rs7693947	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880172	chr4:142355535-142565089	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880173	chr4:142355535-142666106	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142407200-142408400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr4:142407400-142408400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:142407600-142408200	Enhancers	HMEC	breast
4	chr4:142407600-142408400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:142407600-142408400	Active TSS	Aorta	Aorta
6	chr4:142407600-142408600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:142407600-142408600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:142407600-142408600	Enhancers	NHEK	skin
9	chr4:142408000-142408400	Enhancers	HSMM	muscle
10	chr4:142408000-142408400	Active TSS	Osteobl	bone
11	chr4:142408000-142408600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:142408000-142408600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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