Variant report

Variant	rs60272797
Chromosome Location	chr4:142396298-142396299
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs17007297	0.85[AMR][1000 genomes]
rs17007300	0.85[AMR][1000 genomes]
rs4956296	1.00[AMR][1000 genomes]
rs4956379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4956383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4956394	0.85[AMR][1000 genomes]
rs56684354	0.85[AMR][1000 genomes]
rs57502347	1.00[AMR][1000 genomes]
rs60744814	0.85[AMR][1000 genomes]
rs61001905	0.85[AMR][1000 genomes]
rs61130859	0.85[AMR][1000 genomes]
rs6830079	0.85[AMR][1000 genomes]
rs72940611	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72940614	0.85[AMR][1000 genomes]
rs72940626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940636	0.85[AMR][1000 genomes]
rs72940637	1.00[AMR][1000 genomes]
rs72940639	1.00[AMR][1000 genomes]
rs72940641	0.85[AMR][1000 genomes]
rs72940643	0.85[AMR][1000 genomes]
rs72940644	0.85[AMR][1000 genomes]
rs72940648	0.85[AMR][1000 genomes]
rs72940653	1.00[AMR][1000 genomes]
rs72940673	1.00[AMR][1000 genomes]
rs72940682	1.00[AMR][1000 genomes]
rs72942598	1.00[AMR][1000 genomes]
rs72942601	1.00[AMR][1000 genomes]
rs7691233	0.85[AMR][1000 genomes]
rs7692579	1.00[AMR][1000 genomes]
rs7693947	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880172	chr4:142355535-142565089	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880173	chr4:142355535-142666106	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142385800-142407600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:142390800-142404400	Weak transcription	Pancreas	Pancrea
3	chr4:142394000-142396600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:142394200-142396400	Enhancers	Osteobl	bone
5	chr4:142394400-142396400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:142394600-142396400	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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