Variant report

Variant	rs6830079
Chromosome Location	chr4:142406502-142406503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs17007297	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17007300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4956296	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4956379	0.85[AMR][1000 genomes]
rs4956383	0.85[AMR][1000 genomes]
rs56684354	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57502347	0.85[AMR][1000 genomes]
rs60272797	0.85[AMR][1000 genomes]
rs60744814	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61001905	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940626	0.85[AMR][1000 genomes]
rs72940633	0.85[AMR][1000 genomes]
rs72940636	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940637	0.85[AMR][1000 genomes]
rs72940639	0.85[AMR][1000 genomes]
rs72940641	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940643	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940644	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940648	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940653	0.85[AMR][1000 genomes]
rs72940673	0.85[AMR][1000 genomes]
rs72940682	0.85[AMR][1000 genomes]
rs72942598	0.85[AMR][1000 genomes]
rs72942601	0.85[AMR][1000 genomes]
rs7692579	0.85[AMR][1000 genomes]
rs7693947	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880172	chr4:142355535-142565089	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880173	chr4:142355535-142666106	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142385800-142407600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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