Variant report

Variant	rs72942601
Chromosome Location	chr4:142451460-142451461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:142446873..142449309-chr4:142450075..142451598,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs17007297	0.85[AMR][1000 genomes]
rs17007300	0.85[AMR][1000 genomes]
rs4956296	1.00[AMR][1000 genomes]
rs4956379	1.00[AMR][1000 genomes]
rs4956383	1.00[AMR][1000 genomes]
rs4956394	0.85[AMR][1000 genomes]
rs56684354	0.85[AMR][1000 genomes]
rs57502347	1.00[AMR][1000 genomes]
rs60272797	1.00[AMR][1000 genomes]
rs60744814	0.85[AMR][1000 genomes]
rs61001905	0.85[AMR][1000 genomes]
rs61130859	0.85[AMR][1000 genomes]
rs6830079	0.85[AMR][1000 genomes]
rs72940611	0.85[AMR][1000 genomes]
rs72940614	0.85[AMR][1000 genomes]
rs72940626	1.00[AMR][1000 genomes]
rs72940633	1.00[AMR][1000 genomes]
rs72940636	0.85[AMR][1000 genomes]
rs72940637	1.00[AMR][1000 genomes]
rs72940639	1.00[AMR][1000 genomes]
rs72940641	0.85[AMR][1000 genomes]
rs72940643	0.85[AMR][1000 genomes]
rs72940644	0.85[AMR][1000 genomes]
rs72940648	0.85[AMR][1000 genomes]
rs72940653	1.00[AMR][1000 genomes]
rs72940673	1.00[AMR][1000 genomes]
rs72940682	1.00[AMR][1000 genomes]
rs72942598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7691233	0.85[AMR][1000 genomes]
rs7692579	1.00[AMR][1000 genomes]
rs7693947	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880172	chr4:142355535-142565089	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880173	chr4:142355535-142666106	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830094	chr4:142411738-142567788	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3401979	chr4:142434442-142803321	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv526989	chr4:142444108-142501053	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142447200-142461200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links