Variant report
| Variant | rs61651334 |
|---|---|
| Chromosome Location | chr4:142458737-142458738 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:142457149..142460025-chr4:142460806..142464017,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs17007289 | 1.00[EUR][1000 genomes] |
| rs17007294 | 1.00[EUR][1000 genomes] |
| rs17007297 | 1.00[EUR][1000 genomes] |
| rs17007300 | 1.00[EUR][1000 genomes] |
| rs17007330 | 1.00[EUR][1000 genomes] |
| rs17007343 | 1.00[EUR][1000 genomes] |
| rs17007350 | 1.00[EUR][1000 genomes] |
| rs17007364 | 1.00[EUR][1000 genomes] |
| rs17007403 | 1.00[EUR][1000 genomes] |
| rs17007434 | 1.00[EUR][1000 genomes] |
| rs17007476 | 1.00[EUR][1000 genomes] |
| rs17007498 | 1.00[EUR][1000 genomes] |
| rs17007503 | 1.00[EUR][1000 genomes] |
| rs28541643 | 1.00[EUR][1000 genomes] |
| rs4956296 | 1.00[EUR][1000 genomes] |
| rs4956382 | 1.00[EUR][1000 genomes] |
| rs56684354 | 1.00[EUR][1000 genomes] |
| rs56736690 | 1.00[EUR][1000 genomes] |
| rs56940882 | 1.00[EUR][1000 genomes] |
| rs58221817 | 1.00[EUR][1000 genomes] |
| rs58708839 | 1.00[EUR][1000 genomes] |
| rs59129365 | 1.00[EUR][1000 genomes] |
| rs59652905 | 1.00[EUR][1000 genomes] |
| rs60489560 | 1.00[AMR][1000 genomes] |
| rs60497076 | 1.00[EUR][1000 genomes] |
| rs60744814 | 1.00[EUR][1000 genomes] |
| rs61001905 | 1.00[EUR][1000 genomes] |
| rs61484146 | 1.00[EUR][1000 genomes] |
| rs6843942 | 1.00[EUR][1000 genomes] |
| rs72940636 | 1.00[EUR][1000 genomes] |
| rs72940637 | 1.00[EUR][1000 genomes] |
| rs72940639 | 1.00[EUR][1000 genomes] |
| rs72940641 | 1.00[EUR][1000 genomes] |
| rs72940643 | 1.00[EUR][1000 genomes] |
| rs72940644 | 1.00[EUR][1000 genomes] |
| rs72940648 | 1.00[EUR][1000 genomes] |
| rs72940682 | 1.00[EUR][1000 genomes] |
| rs73849784 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv880172 | chr4:142355535-142565089 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv880173 | chr4:142355535-142666106 | Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830094 | chr4:142411738-142567788 | Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | esv3401979 | chr4:142434442-142803321 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv526989 | chr4:142444108-142501053 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv1018949 | chr4:142451823-142732365 | Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:142447200-142461200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
