Variant report

Variant	rs17007434
Chromosome Location	chr4:142496947-142496948
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs17007289	1.00[EUR][1000 genomes]
rs17007294	1.00[EUR][1000 genomes]
rs17007297	1.00[EUR][1000 genomes]
rs17007300	1.00[EUR][1000 genomes]
rs17007330	1.00[EUR][1000 genomes]
rs17007343	1.00[EUR][1000 genomes]
rs17007350	1.00[EUR][1000 genomes]
rs17007364	1.00[EUR][1000 genomes]
rs17007403	1.00[EUR][1000 genomes]
rs17007476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17007498	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17007503	1.00[EUR][1000 genomes]
rs28541643	1.00[EUR][1000 genomes]
rs4956296	1.00[EUR][1000 genomes]
rs4956382	1.00[EUR][1000 genomes]
rs56682432	1.00[EUR][1000 genomes]
rs56684354	1.00[EUR][1000 genomes]
rs56736690	1.00[EUR][1000 genomes]
rs56940882	1.00[EUR][1000 genomes]
rs57366880	1.00[EUR][1000 genomes]
rs57832427	1.00[EUR][1000 genomes]
rs58143392	1.00[EUR][1000 genomes]
rs58529018	1.00[EUR][1000 genomes]
rs58708839	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59129365	1.00[EUR][1000 genomes]
rs59652905	1.00[EUR][1000 genomes]
rs59748763	1.00[EUR][1000 genomes]
rs60497076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60744814	1.00[EUR][1000 genomes]
rs61001905	1.00[EUR][1000 genomes]
rs61484146	1.00[EUR][1000 genomes]
rs61651334	1.00[EUR][1000 genomes]
rs6843942	1.00[EUR][1000 genomes]
rs72940636	1.00[EUR][1000 genomes]
rs72940637	1.00[EUR][1000 genomes]
rs72940639	1.00[EUR][1000 genomes]
rs72940641	1.00[EUR][1000 genomes]
rs72940643	1.00[EUR][1000 genomes]
rs72940644	1.00[EUR][1000 genomes]
rs72940648	1.00[EUR][1000 genomes]
rs72940682	1.00[EUR][1000 genomes]
rs73849784	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880172	chr4:142355535-142565089	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880173	chr4:142355535-142666106	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830094	chr4:142411738-142567788	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3401979	chr4:142434442-142803321	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv526989	chr4:142444108-142501053	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1018949	chr4:142451823-142732365	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1030822	chr4:142487721-142706053	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1027004	chr4:142487721-143007320	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142493000-142497000	Weak transcription	Osteobl	bone
2	chr4:142493200-142497000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr4:142494600-142498400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:142496400-142498200	Enhancers	Fetal Lung	lung
5	chr4:142496600-142497000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:142496600-142497600	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links