Variant report

Variant	rs17007503
Chromosome Location	chr4:142575154-142575155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:142296783..142297618-chr4:142574582..142575731,3	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10452236	1.00[EUR][1000 genomes]
rs17007289	1.00[EUR][1000 genomes]
rs17007294	1.00[EUR][1000 genomes]
rs17007297	1.00[EUR][1000 genomes]
rs17007300	1.00[EUR][1000 genomes]
rs17007330	1.00[EUR][1000 genomes]
rs17007343	1.00[EUR][1000 genomes]
rs17007350	1.00[EUR][1000 genomes]
rs17007364	1.00[EUR][1000 genomes]
rs17007403	1.00[EUR][1000 genomes]
rs17007434	1.00[EUR][1000 genomes]
rs17007476	0.83[MKK][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs17007498	1.00[EUR][1000 genomes]
rs17007506	1.00[ASW][hapmap]
rs28541643	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4956296	1.00[EUR][1000 genomes]
rs4956382	1.00[EUR][1000 genomes]
rs56214358	1.00[EUR][1000 genomes]
rs56682432	1.00[EUR][1000 genomes]
rs56684354	1.00[EUR][1000 genomes]
rs56736690	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57366880	1.00[EUR][1000 genomes]
rs57832427	1.00[EUR][1000 genomes]
rs58143392	1.00[EUR][1000 genomes]
rs58529018	1.00[EUR][1000 genomes]
rs58708839	1.00[EUR][1000 genomes]
rs59129365	1.00[EUR][1000 genomes]
rs59652905	1.00[EUR][1000 genomes]
rs59748763	1.00[EUR][1000 genomes]
rs60497076	1.00[EUR][1000 genomes]
rs60744814	1.00[EUR][1000 genomes]
rs61001905	1.00[EUR][1000 genomes]
rs61484146	1.00[EUR][1000 genomes]
rs61651334	1.00[EUR][1000 genomes]
rs6843942	1.00[EUR][1000 genomes]
rs72940636	1.00[EUR][1000 genomes]
rs72940637	1.00[EUR][1000 genomes]
rs72940639	1.00[EUR][1000 genomes]
rs72940641	1.00[EUR][1000 genomes]
rs72940643	1.00[EUR][1000 genomes]
rs72940644	1.00[EUR][1000 genomes]
rs72940648	1.00[EUR][1000 genomes]
rs72940682	1.00[EUR][1000 genomes]
rs73849784	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880173	chr4:142355535-142666106	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3401979	chr4:142434442-142803321	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1018949	chr4:142451823-142732365	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1030822	chr4:142487721-142706053	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1027004	chr4:142487721-143007320	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142560000-142575200	Weak transcription	Right Atrium	heart
2	chr4:142564000-142575200	Weak transcription	Psoas Muscle	Psoas
3	chr4:142565400-142580600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr4:142567800-142586400	Weak transcription	HSMM	muscle
5	chr4:142568800-142581000	Weak transcription	A549	lung
6	chr4:142569200-142575200	Weak transcription	Aorta	Aorta
7	chr4:142569200-142577000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:142569200-142582800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:142570200-142579200	Weak transcription	Spleen	Spleen
10	chr4:142570400-142586400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr4:142570800-142578800	Weak transcription	GM12878-XiMat	blood
12	chr4:142573000-142575200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:142573000-142575800	Enhancers	Fetal Stomach	stomach
14	chr4:142573400-142575600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:142573400-142575800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:142573800-142575200	Weak transcription	Adipose Nuclei	Adipose
17	chr4:142574000-142575200	Weak transcription	Osteobl	bone
18	chr4:142574000-142579000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:142574000-142579200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:142574200-142575200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:142574200-142575200	Weak transcription	Fetal Heart	heart
22	chr4:142574200-142575200	Weak transcription	Small Intestine	intestine
23	chr4:142574200-142575200	Weak transcription	NH-A	brain
24	chr4:142574200-142575200	Weak transcription	NHDF-Ad	bronchial
25	chr4:142574200-142575200	Weak transcription	NHLF	lung
26	chr4:142574200-142586600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr4:142574800-142576200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr4:142574800-142576400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr4:142575000-142575600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr4:142575000-142575800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr4:142575000-142575800	Enhancers	HUVEC	blood vessel

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