Variant report

Variant	rs10019227
Chromosome Location	chr4:69663547-69663548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10000284	0.95[ASN][1000 genomes]
rs10006590	0.95[ASN][1000 genomes]
rs10010915	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10028938	0.95[ASN][1000 genomes]
rs10031653	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10032432	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10034195	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2271513	1.00[ASN][1000 genomes]
rs28488465	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28563143	0.83[AMR][1000 genomes]
rs2942857	0.91[ASN][1000 genomes]
rs294762	0.95[ASN][1000 genomes]
rs294763	0.95[ASN][1000 genomes]
rs294766	0.89[ASN][1000 genomes]
rs294767	0.95[ASN][1000 genomes]
rs294768	0.95[ASN][1000 genomes]
rs294773	0.95[ASN][1000 genomes]
rs294775	0.95[ASN][1000 genomes]
rs294778	0.95[ASN][1000 genomes]
rs34100980	0.95[ASN][1000 genomes]
rs422548	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59226493	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6815169	0.95[ASN][1000 genomes]
rs6832857	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6834626	0.95[ASN][1000 genomes]
rs73823936	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73823942	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73823943	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7673881	0.91[ASN][1000 genomes]
rs7681961	0.91[ASN][1000 genomes]
rs7687582	0.91[ASN][1000 genomes]
rs835308	0.95[ASN][1000 genomes]
rs835309	0.91[ASN][1000 genomes]
rs835310	0.95[ASN][1000 genomes]
rs835313	0.95[ASN][1000 genomes]
rs835314	0.95[ASN][1000 genomes]
rs835315	0.95[ASN][1000 genomes]
rs835317	0.95[ASN][1000 genomes]
rs835318	0.95[ASN][1000 genomes]
rs835319	0.95[ASN][1000 genomes]
rs9993124	0.95[ASN][1000 genomes]
rs9993496	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005513	chr4:69446718-69890307	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1013885	chr4:69592847-69667996	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829961	chr4:69592847-69695467	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv594579	chr4:69597175-69665970	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1014042	chr4:69599853-69667996	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv594580	chr4:69629425-69706273	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv964275	chr4:69654105-69665543	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv999654	chr4:69661415-70132110	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
9	nsv879377	chr4:69663003-69771935	Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69662400-69663800	Enhancers	Liver	Liver
2	chr4:69662800-69664000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:69663000-69663800	Enhancers	Rectal Smooth Muscle	rectum
4	chr4:69663000-69664000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:69663000-69664000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:69663000-69664200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr4:69663200-69663800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:69663200-69664000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr4:69663400-69663800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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