Variant report

Variant	rs9993496
Chromosome Location	chr4:69669667-69669668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10000284	1.00[ASN][1000 genomes]
rs10006590	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10010915	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10019227	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10028938	1.00[ASN][1000 genomes]
rs10031653	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10032432	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10034195	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2271513	0.95[ASN][1000 genomes]
rs28396652	0.87[AMR][1000 genomes]
rs28436905	0.87[AMR][1000 genomes]
rs28488465	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28505121	0.87[AMR][1000 genomes]
rs28563143	0.93[AMR][1000 genomes]
rs28855689	0.87[AMR][1000 genomes]
rs2942857	0.95[ASN][1000 genomes]
rs294762	1.00[ASN][1000 genomes]
rs294763	1.00[ASN][1000 genomes]
rs294766	0.94[ASN][1000 genomes]
rs294767	1.00[ASN][1000 genomes]
rs294768	1.00[ASN][1000 genomes]
rs294773	1.00[ASN][1000 genomes]
rs294775	1.00[ASN][1000 genomes]
rs294778	1.00[ASN][1000 genomes]
rs34100980	1.00[ASN][1000 genomes]
rs422548	0.91[ASN][1000 genomes]
rs59226493	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6815169	0.91[ASN][1000 genomes]
rs6832857	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6834626	0.91[ASN][1000 genomes]
rs72849075	0.87[AMR][1000 genomes]
rs73823936	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73823942	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73823943	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs752209	0.87[AMR][1000 genomes]
rs7673881	0.87[ASN][1000 genomes]
rs7681961	0.87[ASN][1000 genomes]
rs7687582	0.87[ASN][1000 genomes]
rs835308	1.00[ASN][1000 genomes]
rs835309	0.96[ASN][1000 genomes]
rs835310	1.00[ASN][1000 genomes]
rs835313	1.00[ASN][1000 genomes]
rs835314	1.00[ASN][1000 genomes]
rs835315	1.00[ASN][1000 genomes]
rs835317	1.00[ASN][1000 genomes]
rs835318	1.00[ASN][1000 genomes]
rs835319	1.00[ASN][1000 genomes]
rs9993124	1.00[ASN][1000 genomes]
rs9996074	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005513	chr4:69446718-69890307	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv829961	chr4:69592847-69695467	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv594580	chr4:69629425-69706273	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv999654	chr4:69661415-70132110	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv879377	chr4:69663003-69771935	Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1005777	chr4:69665571-69713817	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv869970	chr4:69665769-69713522	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1007851	chr4:69667996-69713817	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2760902	chr4:69668008-69723767	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69668400-69670000	Enhancers	Fetal Intestine Small	intestine
2	chr4:69669400-69673000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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