Variant report

Variant	rs7681961
Chromosome Location	chr4:69605785-69605786
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10000284	0.87[ASN][1000 genomes]
rs10006590	0.87[ASN][1000 genomes]
rs10010915	0.91[ASN][1000 genomes]
rs10019227	0.91[ASN][1000 genomes]
rs10028938	0.87[ASN][1000 genomes]
rs10031653	0.87[ASN][1000 genomes]
rs10032432	0.82[ASN][1000 genomes]
rs10034195	0.91[ASN][1000 genomes]
rs2271513	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28488465	0.91[ASN][1000 genomes]
rs2942857	0.82[ASN][1000 genomes]
rs294762	0.87[ASN][1000 genomes]
rs294763	0.87[ASN][1000 genomes]
rs294766	0.81[ASN][1000 genomes]
rs294767	0.87[ASN][1000 genomes]
rs294768	0.87[ASN][1000 genomes]
rs294773	0.87[ASN][1000 genomes]
rs294775	0.87[ASN][1000 genomes]
rs294778	0.87[ASN][1000 genomes]
rs34100980	0.87[ASN][1000 genomes]
rs422548	0.95[ASN][1000 genomes]
rs59226493	0.91[ASN][1000 genomes]
rs6815169	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6832857	0.87[ASN][1000 genomes]
rs6834626	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73823936	0.91[ASN][1000 genomes]
rs73823942	0.87[ASN][1000 genomes]
rs73823943	0.87[ASN][1000 genomes]
rs7673881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7687582	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs835308	0.87[ASN][1000 genomes]
rs835309	0.83[ASN][1000 genomes]
rs835310	0.87[ASN][1000 genomes]
rs835313	0.87[ASN][1000 genomes]
rs835314	0.87[ASN][1000 genomes]
rs835315	0.87[ASN][1000 genomes]
rs835317	0.87[ASN][1000 genomes]
rs835318	0.87[ASN][1000 genomes]
rs835319	0.87[ASN][1000 genomes]
rs9993124	0.87[ASN][1000 genomes]
rs9993496	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757061	chr4:69178920-69631668	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv870075	chr4:69218674-69608683	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1005513	chr4:69446718-69890307	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	esv2763366	chr4:69592847-69661427	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1013885	chr4:69592847-69667996	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv829961	chr4:69592847-69695467	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv594579	chr4:69597175-69665970	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1014042	chr4:69599853-69667996	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv3385804	chr4:69604763-69606811	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69602800-69613400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:69605200-69610000	Weak transcription	HepG2	liver

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