Variant report

Variant	rs10021046
Chromosome Location	chr4:15184903-15184904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16891537	0.98[ASN][1000 genomes]
rs1869694	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1869695	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2604557	0.80[ASN][1000 genomes]
rs2702540	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2702562	0.80[ASN][1000 genomes]
rs28434397	0.80[ASN][1000 genomes]
rs3857144	0.91[ASN][1000 genomes]
rs3857145	0.91[ASN][1000 genomes]
rs3899399	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59379956	0.96[ASN][1000 genomes]
rs6449104	0.80[ASN][1000 genomes]
rs6449105	0.80[ASN][1000 genomes]
rs9685332	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1014533	chr4:15181175-15222705	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15164000-15187800	Weak transcription	Aorta	Aorta
2	chr4:15184000-15185000	Enhancers	NH-A	brain
3	chr4:15184000-15185200	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr4:15184000-15185200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr4:15184000-15185400	Enhancers	HSMMtube	muscle
6	chr4:15184200-15185400	Enhancers	HSMM	muscle
7	chr4:15184200-15185600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:15184400-15187600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:15184600-15188000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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