Variant report

Variant	rs16891537
Chromosome Location	chr4:15188370-15188371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10021046	0.98[ASN][1000 genomes]
rs1869694	0.93[ASN][1000 genomes]
rs1869695	0.98[ASN][1000 genomes]
rs2702562	0.82[JPT][hapmap]
rs3857144	0.89[ASN][1000 genomes]
rs3857145	0.89[ASN][1000 genomes]
rs3899399	0.98[ASN][1000 genomes]
rs59379956	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1014533	chr4:15181175-15222705	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15187200-15189000	Enhancers	Fetal Heart	heart
2	chr4:15187200-15189000	Enhancers	HSMM	muscle
3	chr4:15187600-15188400	Enhancers	NH-A	brain
4	chr4:15187600-15188600	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr4:15187600-15189000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:15187800-15188400	Enhancers	Aorta	Aorta
7	chr4:15187800-15188400	Enhancers	Brain Anterior Caudate	brain
8	chr4:15187800-15188800	Enhancers	Brain Angular Gyrus	brain
9	chr4:15188000-15188800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:15188200-15188400	Flanking Active TSS	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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