Variant report

Variant	rs3899399
Chromosome Location	chr4:15190356-15190357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10021046	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891537	0.98[ASN][1000 genomes]
rs1869694	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1869695	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2604557	0.80[ASN][1000 genomes]
rs2702540	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2702562	0.80[ASN][1000 genomes]
rs28434397	0.80[ASN][1000 genomes]
rs3857144	0.91[ASN][1000 genomes]
rs3857145	0.91[ASN][1000 genomes]
rs59379956	0.96[ASN][1000 genomes]
rs6449104	0.80[ASN][1000 genomes]
rs6449105	0.80[ASN][1000 genomes]
rs9685332	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1014533	chr4:15181175-15222705	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15188400-15199600	Weak transcription	Aorta	Aorta
2	chr4:15189400-15191000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:15189400-15191000	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr4:15190000-15191000	Enhancers	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links