Variant report

Variant	rs10024872
Chromosome Location	chr4:55941364-55941365
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SRD5A3-2	chr4:55941359-55941409	ENSG00000250646.1

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28452489	1.00[AMR][1000 genomes]
rs56743302	1.00[AMR][1000 genomes]
rs60295650	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6829950	1.00[AMR][1000 genomes]
rs6829974	1.00[AMR][1000 genomes]
rs73136549	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9991302	0.86[AFR][1000 genomes]
rs9997422	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv829939	chr4:55856771-56005011	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv432603	chr4:55877236-55970782	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55933200-55942000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:55935200-55942000	Weak transcription	Left Ventricle	heart
3	chr4:55935600-55945200	Weak transcription	Right Atrium	heart
4	chr4:55939200-55942000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:55939800-55942000	Enhancers	HUVEC	blood vessel
6	chr4:55939800-55942800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:55940200-55941400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:55940200-55941600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:55940200-55943000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:55940400-55941800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:55940400-55942000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr4:55940400-55942200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:55940600-55942600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:55940600-55942600	Enhancers	NH-A	brain
15	chr4:55940800-55941600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr4:55940800-55942400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr4:55940800-55942600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:55940800-55943200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr4:55941000-55941800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr4:55941000-55942800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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