Variant report

Variant	rs56743302
Chromosome Location	chr4:55804593-55804594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10024872	1.00[AMR][1000 genomes]
rs28452489	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60295650	1.00[AMR][1000 genomes]
rs61185147	1.00[AMR][1000 genomes]
rs6829950	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6829974	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73136549	1.00[AMR][1000 genomes]
rs9997422	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1010982	chr4:55802123-55808403	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55796800-55810200	Weak transcription	Fetal Muscle Leg	muscle
2	chr4:55802600-55807600	Weak transcription	Fetal Stomach	stomach
3	chr4:55802600-55808200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:55803200-55806800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:55803400-55805000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:55803400-55806800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr4:55803600-55804600	Enhancers	Primary hematopoietic stem cells	blood
8	chr4:55803600-55804600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:55803600-55804800	Enhancers	Primary T cells from cord blood	blood
10	chr4:55804000-55804600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:55804000-55805800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr4:55804000-55808200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:55804200-55804600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:55804200-55806800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr4:55804200-55808800	Weak transcription	Stomach Mucosa	stomach
16	chr4:55804200-55811200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr4:55804400-55805800	Weak transcription	HUVEC	blood vessel
18	chr4:55804400-55808000	Weak transcription	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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