Variant report

Variant	rs73136549
Chromosome Location	chr4:55936086-55936087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10024872	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28452489	1.00[AMR][1000 genomes]
rs56743302	1.00[AMR][1000 genomes]
rs60295650	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6829950	1.00[AMR][1000 genomes]
rs6829974	1.00[AMR][1000 genomes]
rs9991302	0.88[AFR][1000 genomes]
rs9997422	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv829939	chr4:55856771-56005011	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv432603	chr4:55877236-55970782	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55932400-55940200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:55933200-55942000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:55934400-55936600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:55934600-55936200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:55935200-55942000	Weak transcription	Left Ventricle	heart
6	chr4:55935400-55939800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr4:55935600-55936200	Enhancers	Adipose Nuclei	Adipose
8	chr4:55935600-55945200	Weak transcription	Right Atrium	heart
9	chr4:55935800-55936600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr4:55936000-55937000	Enhancers	HUVEC	blood vessel
11	chr4:55936000-55940600	Weak transcription	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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