Variant report

Variant	rs10025864
Chromosome Location	chr4:18402863-18402864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10019574	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4698689	0.88[EUR][1000 genomes]
rs4698691	0.82[EUR][1000 genomes]
rs55902348	0.92[ASN][1000 genomes]
rs6449376	0.83[EUR][1000 genomes]
rs6825678	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6832516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6838302	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7663805	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18391600-18404800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:18393400-18403000	Weak transcription	Small Intestine	intestine
3	chr4:18396800-18403000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:18400600-18404400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:18401400-18408800	Enhancers	Fetal Intestine Large	intestine
6	chr4:18401400-18409200	Enhancers	Fetal Intestine Small	intestine
7	chr4:18402000-18404000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr4:18402800-18403200	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr4:18402800-18405000	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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