Variant report

Variant	rs55902348
Chromosome Location	chr4:18409283-18409284
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10025864	0.92[ASN][1000 genomes]
rs10939785	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12646743	0.82[EUR][1000 genomes]
rs12650574	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16896930	0.83[AMR][1000 genomes]
rs16896982	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56708160	0.84[EUR][1000 genomes]
rs59286600	0.81[AMR][1000 genomes]
rs6833761	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6838302	0.93[ASN][1000 genomes]
rs6848900	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6851547	0.84[EUR][1000 genomes]
rs73232456	0.83[AMR][1000 genomes]
rs7674800	0.81[EUR][1000 genomes]
rs7684376	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18403800-18411800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:18408800-18413200	Weak transcription	Fetal Intestine Large	intestine
3	chr4:18409000-18413400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:18409200-18410200	Weak transcription	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links