Variant report

Variant	rs6848900
Chromosome Location	chr4:18392517-18392518
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10939785	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12650574	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16896930	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16896982	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55902348	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59286600	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6449376	0.88[ASN][1000 genomes]
rs6833761	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73232456	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18389200-18394200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:18389400-18394400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:18391600-18404800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr4:18392200-18392600	Enhancers	HUVEC	blood vessel
5	chr4:18392200-18392800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:18392200-18392800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:18392200-18392800	Enhancers	NHEK	skin
8	chr4:18392400-18392800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:18392400-18392800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:18392400-18394000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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