Variant report

Variant	rs59286600
Chromosome Location	chr4:18320094-18320095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10939785	0.84[AMR][1000 genomes]
rs12650574	0.84[AMR][1000 genomes]
rs16896930	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16896934	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16896982	0.84[AMR][1000 genomes]
rs55902348	0.81[AMR][1000 genomes]
rs6833761	0.84[AMR][1000 genomes]
rs6848900	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73232456	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18315400-18320200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:18317000-18320600	Weak transcription	Pancreas	Pancrea
3	chr4:18319200-18320200	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:18319800-18320600	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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