Variant report

Variant	rs10939785
Chromosome Location	chr4:18398489-18398490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12646743	0.83[EUR][1000 genomes]
rs12650574	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16896930	0.86[AMR][1000 genomes]
rs16896982	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55902348	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56708160	0.83[EUR][1000 genomes]
rs59286600	0.84[AMR][1000 genomes]
rs6449376	0.81[ASN][1000 genomes]
rs67551652	0.81[EUR][1000 genomes]
rs6833761	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6848900	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6851547	0.83[EUR][1000 genomes]
rs73232456	0.86[AMR][1000 genomes]
rs7674800	0.80[EUR][1000 genomes]
rs7684376	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18391600-18404800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:18393400-18403000	Weak transcription	Small Intestine	intestine
3	chr4:18394200-18399200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:18394400-18399000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:18396600-18400600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:18396800-18403000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:18397600-18399200	Weak transcription	Fetal Intestine Large	intestine
8	chr4:18397800-18399200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:18398000-18399200	Weak transcription	Fetal Intestine Small	intestine
10	chr4:18398200-18399200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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