Variant report

Variant	rs6449376
Chromosome Location	chr4:18395528-18395529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10019574	0.82[EUR][1000 genomes]
rs10025864	0.83[EUR][1000 genomes]
rs10939785	0.81[ASN][1000 genomes]
rs4698689	0.91[EUR][1000 genomes]
rs6825678	0.83[EUR][1000 genomes]
rs6832516	0.82[EUR][1000 genomes]
rs6833761	0.92[ASN][1000 genomes]
rs6838302	0.90[EUR][1000 genomes]
rs6848900	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6449376	MED28	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18391600-18404800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:18393400-18403000	Weak transcription	Small Intestine	intestine
3	chr4:18394000-18396400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:18394200-18397400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:18394200-18399200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:18394400-18399000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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