Variant report

Variant	rs10026139
Chromosome Location	chr4:125858830-125858831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125857080..125860001-chr4:125867292..125869846,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10003035	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10014533	1.00[AMR][1000 genomes]
rs10026866	1.00[AMR][1000 genomes]
rs10034057	1.00[AMR][1000 genomes]
rs28370279	1.00[AMR][1000 genomes]
rs28444964	1.00[AMR][1000 genomes]
rs28464139	1.00[AMR][1000 genomes]
rs28501184	1.00[AMR][1000 genomes]
rs28512489	1.00[AMR][1000 genomes]
rs28581997	1.00[AMR][1000 genomes]
rs28622173	1.00[AMR][1000 genomes]
rs28627553	1.00[AMR][1000 genomes]
rs28640868	1.00[AMR][1000 genomes]
rs28680832	1.00[AMR][1000 genomes]
rs28681347	1.00[AMR][1000 genomes]
rs7681617	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9985563	1.00[AMR][1000 genomes]
rs9992388	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125844800-125860600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125853200-125859000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:125856200-125859000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr4:125856200-125859200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:125856200-125860600	Enhancers	Fetal Muscle Leg	muscle
6	chr4:125856200-125866800	Enhancers	Hela-S3	cervix
7	chr4:125856400-125860400	Weak transcription	NHEK	skin
8	chr4:125856600-125859000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:125856600-125859800	Enhancers	Fetal Heart	heart
10	chr4:125856600-125860600	Weak transcription	Right Ventricle	heart
11	chr4:125856800-125859000	Enhancers	Fetal Lung	lung
12	chr4:125857400-125859000	Enhancers	Fetal Stomach	stomach
13	chr4:125857600-125859600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr4:125857600-125862600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:125857800-125859000	Weak transcription	Psoas Muscle	Psoas
16	chr4:125857800-125859200	Weak transcription	HSMMtube	muscle
17	chr4:125857800-125859600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr4:125857800-125861400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr4:125858000-125859000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:125858000-125859200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:125858000-125859200	Weak transcription	Esophagus	oesophagus
22	chr4:125858000-125859200	Weak transcription	Gastric	stomach
23	chr4:125858000-125859400	Weak transcription	Osteobl	bone
24	chr4:125858000-125860000	Weak transcription	HUVEC	blood vessel
25	chr4:125858000-125860200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:125858000-125860200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr4:125858000-125860400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr4:125858000-125860400	Weak transcription	Lung	lung
29	chr4:125858000-125860400	Weak transcription	Right Atrium	heart
30	chr4:125858000-125860800	Weak transcription	NH-A	brain
31	chr4:125858000-125861200	Weak transcription	Adipose Nuclei	Adipose
32	chr4:125858000-125861400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr4:125858000-125865000	Weak transcription	Ovary	ovary
34	chr4:125858000-125868000	Weak transcription	Pancreas	Pancrea
35	chr4:125858200-125859000	Enhancers	Fetal Kidney	kidney
36	chr4:125858200-125859200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr4:125858200-125859200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr4:125858200-125859200	Weak transcription	NHDF-Ad	bronchial
39	chr4:125858200-125859400	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr4:125858200-125859400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr4:125858200-125859400	Weak transcription	HSMM	muscle
42	chr4:125858200-125860200	Weak transcription	NHLF	lung
43	chr4:125858200-125861400	Weak transcription	Stomach Mucosa	stomach
44	chr4:125858200-125867800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr4:125858400-125859400	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr4:125858600-125859400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr4:125858600-125859600	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr4:125858600-125859600	Enhancers	Left Ventricle	heart
49	chr4:125858600-125859800	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr4:125858600-125861000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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