Variant report

Variant	rs28640868
Chromosome Location	chr4:125789819-125789820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10003035	1.00[AMR][1000 genomes]
rs10014533	1.00[AMR][1000 genomes]
rs10022566	0.87[AFR][1000 genomes]
rs10026139	1.00[AMR][1000 genomes]
rs10026866	1.00[AMR][1000 genomes]
rs10034057	1.00[AMR][1000 genomes]
rs28370279	1.00[AMR][1000 genomes]
rs28444964	1.00[AMR][1000 genomes]
rs28464139	1.00[AMR][1000 genomes]
rs28501184	1.00[AMR][1000 genomes]
rs28512489	1.00[AMR][1000 genomes]
rs28581997	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28622173	1.00[AMR][1000 genomes]
rs28627553	1.00[AMR][1000 genomes]
rs28680832	1.00[AMR][1000 genomes]
rs28681347	1.00[AMR][1000 genomes]
rs7681617	1.00[AMR][1000 genomes]
rs9985563	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9992388	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125787200-125790000	Enhancers	Muscle Satellite Cultured Cells	--
2	chr4:125787200-125791600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:125787400-125790800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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