Variant report
| Variant | rs10034057 |
|---|---|
| Chromosome Location | chr4:125806225-125806226 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000151458 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10003035 | 1.00[AMR][1000 genomes] |
| rs10014533 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10026139 | 1.00[AMR][1000 genomes] |
| rs10026866 | 1.00[AMR][1000 genomes] |
| rs28370279 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28444964 | 1.00[AMR][1000 genomes] |
| rs28464139 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28501184 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28512489 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28581997 | 1.00[AMR][1000 genomes] |
| rs28622173 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28627553 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28640868 | 1.00[AMR][1000 genomes] |
| rs28680832 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28681347 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7681617 | 1.00[AMR][1000 genomes] |
| rs9985563 | 1.00[AMR][1000 genomes] |
| rs9992078 | 0.86[AFR][1000 genomes] |
| rs9992388 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011752 | chr4:125708756-125932456 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1001338 | chr4:125708756-126103293 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830050 | chr4:125717858-125888563 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv879884 | chr4:125791252-125841892 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv879885 | chr4:125791252-125852874 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv879886 | chr4:125791252-125856465 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 7 | esv3377839 | chr4:125806152-125809897 | Weak transcription Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125798200-125820800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr4:125805800-125806800 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
