Variant report
| Variant | rs10028241 |
|---|---|
| Chromosome Location | chr4:74772479-74772480 |
| allele | C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10000849 | 1.00[ASN][1000 genomes] |
| rs10003573 | 1.00[ASN][1000 genomes] |
| rs10007450 | 1.00[ASN][1000 genomes] |
| rs10014539 | 1.00[ASN][1000 genomes] |
| rs10017601 | 1.00[ASN][1000 genomes] |
| rs10024248 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10034225 | 1.00[ASN][1000 genomes] |
| rs10470727 | 1.00[ASN][1000 genomes] |
| rs13435411 | 1.00[ASN][1000 genomes] |
| rs184761 | 1.00[ASN][1000 genomes] |
| rs2564595 | 1.00[ASN][1000 genomes] |
| rs28378124 | 1.00[ASN][1000 genomes] |
| rs28481533 | 1.00[ASN][1000 genomes] |
| rs28522863 | 1.00[ASN][1000 genomes] |
| rs28538897 | 1.00[ASN][1000 genomes] |
| rs28563821 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28589827 | 1.00[ASN][1000 genomes] |
| rs28602974 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28634348 | 1.00[ASN][1000 genomes] |
| rs28652714 | 1.00[ASN][1000 genomes] |
| rs28673400 | 1.00[ASN][1000 genomes] |
| rs28681485 | 1.00[ASN][1000 genomes] |
| rs28711618 | 1.00[ASN][1000 genomes] |
| rs28872183 | 1.00[ASN][1000 genomes] |
| rs34943257 | 1.00[ASN][1000 genomes] |
| rs352017 | 1.00[ASN][1000 genomes] |
| rs352022 | 1.00[ASN][1000 genomes] |
| rs447672 | 1.00[ASN][1000 genomes] |
| rs485912 | 1.00[ASN][1000 genomes] |
| rs525317 | 1.00[ASN][1000 genomes] |
| rs648318 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1001725 | chr4:74354050-74860924 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
| 2 | nsv530126 | chr4:74376622-74843892 | Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 3 | nsv432612 | chr4:74723372-74774372 | Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv525980 | chr4:74731526-75382209 | Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:74768400-74772600 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 2 | chr4:74768800-74781600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 3 | chr4:74768800-74782200 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
