Variant report

Variant	rs28538897
Chromosome Location	chr4:74762690-74762691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74762185..74764051-chr4:74784801..74787079,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10000849	1.00[ASN][1000 genomes]
rs10003573	1.00[ASN][1000 genomes]
rs10007450	1.00[ASN][1000 genomes]
rs10014539	1.00[ASN][1000 genomes]
rs10017601	1.00[ASN][1000 genomes]
rs10024248	1.00[ASN][1000 genomes]
rs10028241	1.00[ASN][1000 genomes]
rs10034225	1.00[ASN][1000 genomes]
rs10470727	1.00[ASN][1000 genomes]
rs13435411	1.00[ASN][1000 genomes]
rs184761	1.00[ASN][1000 genomes]
rs2564595	1.00[ASN][1000 genomes]
rs28378124	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28433328	1.00[AMR][1000 genomes]
rs28439247	1.00[AMR][1000 genomes]
rs28481533	1.00[ASN][1000 genomes]
rs28522863	1.00[ASN][1000 genomes]
rs28563821	1.00[ASN][1000 genomes]
rs28589827	1.00[ASN][1000 genomes]
rs28602974	1.00[ASN][1000 genomes]
rs28634348	1.00[ASN][1000 genomes]
rs28652714	1.00[ASN][1000 genomes]
rs28673400	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28681485	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28711618	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28719470	1.00[EUR][1000 genomes]
rs28872183	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34943257	1.00[ASN][1000 genomes]
rs352017	1.00[ASN][1000 genomes]
rs352022	1.00[ASN][1000 genomes]
rs447672	1.00[ASN][1000 genomes]
rs485912	1.00[ASN][1000 genomes]
rs525317	1.00[ASN][1000 genomes]
rs61734750	1.00[EUR][1000 genomes]
rs648318	1.00[ASN][1000 genomes]
rs6817745	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv432612	chr4:74723372-74774372	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74757200-74770400	Enhancers	NHDF-Ad	bronchial
2	chr4:74759200-74764600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:74759800-74770400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:74760200-74767000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:74760600-74763800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:74760600-74764200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:74760800-74764000	Enhancers	Osteobl	bone
8	chr4:74761200-74766600	Weak transcription	K562	blood
9	chr4:74761200-74767400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:74761200-74768600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:74761400-74763000	Weak transcription	Adipose Nuclei	Adipose
12	chr4:74761800-74766800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:74762400-74763400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr4:74762600-74762800	Enhancers	NHLF	lung
15	chr4:74762600-74763200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:74762600-74763200	Weak transcription	Fetal Intestine Small	intestine
17	chr4:74762600-74763800	Enhancers	Muscle Satellite Cultured Cells	--

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