Variant report

Variant	rs525317
Chromosome Location	chr4:74757662-74757663
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10000849	1.00[ASN][1000 genomes]
rs10003573	1.00[ASN][1000 genomes]
rs10007450	1.00[ASN][1000 genomes]
rs10014539	1.00[ASN][1000 genomes]
rs10017601	1.00[ASN][1000 genomes]
rs10024248	1.00[ASN][1000 genomes]
rs10028241	1.00[ASN][1000 genomes]
rs10034225	1.00[ASN][1000 genomes]
rs10470727	1.00[ASN][1000 genomes]
rs13435411	1.00[ASN][1000 genomes]
rs184761	1.00[ASN][1000 genomes]
rs2564595	1.00[ASN][1000 genomes]
rs28378124	1.00[ASN][1000 genomes]
rs28481533	1.00[ASN][1000 genomes]
rs28522863	1.00[ASN][1000 genomes]
rs28538897	1.00[ASN][1000 genomes]
rs28563821	1.00[ASN][1000 genomes]
rs28589827	1.00[ASN][1000 genomes]
rs28602974	1.00[ASN][1000 genomes]
rs28634348	1.00[ASN][1000 genomes]
rs28652714	1.00[ASN][1000 genomes]
rs28673400	1.00[ASN][1000 genomes]
rs28681485	1.00[ASN][1000 genomes]
rs28711618	1.00[ASN][1000 genomes]
rs28872183	1.00[ASN][1000 genomes]
rs34943257	1.00[ASN][1000 genomes]
rs352017	1.00[ASN][1000 genomes]
rs352022	1.00[ASN][1000 genomes]
rs447672	1.00[ASN][1000 genomes]
rs485912	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs549967	1.00[TSI][hapmap]
rs648318	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv432612	chr4:74723372-74774372	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74752000-74760600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:74752200-74758000	Weak transcription	A549	lung
3	chr4:74756400-74758400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr4:74756800-74758200	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr4:74756800-74758600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:74756800-74759200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:74757000-74758000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:74757000-74758800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:74757000-74759000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr4:74757000-74759000	Enhancers	Fetal Intestine Small	intestine
11	chr4:74757000-74760000	Enhancers	Fetal Intestine Large	intestine
12	chr4:74757200-74760000	Weak transcription	Fetal Kidney	kidney
13	chr4:74757200-74770400	Enhancers	NHDF-Ad	bronchial
14	chr4:74757400-74757800	Enhancers	Fetal Stomach	stomach
15	chr4:74757400-74758200	Enhancers	Osteobl	bone
16	chr4:74757400-74758400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:74757400-74758600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr4:74757400-74761000	Weak transcription	Stomach Mucosa	stomach
19	chr4:74757600-74758200	Enhancers	Adipose Nuclei	Adipose
20	chr4:74757600-74758400	Enhancers	NHLF	lung
21	chr4:74757600-74760200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:74757600-74760600	Weak transcription	Pancreas	Pancrea
23	chr4:74757600-74761200	Weak transcription	Spleen	Spleen

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