Variant report

Variant	rs10030028
Chromosome Location	chr4:174329926-174329927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174328825..174332802-chr4:174333189..174337913,4	K562	blood:
2	chr4:174329282..174331098-chr4:174333286..174335898,2	K562	blood:
3	chr4:174319036..174321557-chr4:174329622..174331451,2	K562	blood:
4	chr4:174253321..174255548-chr4:174328843..174330389,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164104	Chromatin interaction
ENSG00000164106	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10010027	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs13137653	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1481119	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4695834	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4696070	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6848013	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6852086	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7655268	0.83[AFR][1000 genomes]
rs7687292	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7695846	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174293400-174333200	Weak transcription	Gastric	stomach
2	chr4:174294000-174340400	Weak transcription	Fetal Intestine Large	intestine
3	chr4:174294200-174334400	Weak transcription	Right Ventricle	heart
4	chr4:174294200-174341600	Weak transcription	Fetal Intestine Small	intestine
5	chr4:174294600-174338000	Weak transcription	Fetal Brain Male	brain
6	chr4:174294800-174334200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr4:174294800-174336200	Weak transcription	Adipose Nuclei	Adipose
8	chr4:174294800-174341800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr4:174295400-174331400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:174295400-174332200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr4:174295400-174335800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr4:174297200-174333400	Weak transcription	Fetal Muscle Leg	muscle
13	chr4:174297200-174338000	Weak transcription	Esophagus	oesophagus
14	chr4:174297400-174338000	Weak transcription	Fetal Lung	lung
15	chr4:174300200-174339000	Weak transcription	Ovary	ovary
16	chr4:174300400-174333000	Weak transcription	Fetal Stomach	stomach
17	chr4:174303000-174333200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr4:174318000-174331400	Weak transcription	Lung	lung
19	chr4:174319600-174335400	Weak transcription	Fetal Brain Female	brain
20	chr4:174319600-174341800	Weak transcription	NHDF-Ad	bronchial
21	chr4:174320600-174331400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:174320600-174332000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:174320600-174335600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr4:174320800-174330200	Weak transcription	Osteobl	bone
25	chr4:174320800-174330600	Weak transcription	Brain Angular Gyrus	brain
26	chr4:174320800-174335600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr4:174320800-174347000	Weak transcription	Aorta	Aorta
28	chr4:174321000-174330800	Weak transcription	Brain Hippocampus Middle	brain
29	chr4:174321000-174331200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr4:174321000-174341800	Weak transcription	Colon Smooth Muscle	Colon
31	chr4:174321000-174341800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr4:174321200-174330400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr4:174321200-174330400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr4:174322400-174333000	Weak transcription	Pancreas	Pancrea
35	chr4:174323800-174333800	Weak transcription	Primary B cells from cord blood	blood
36	chr4:174324600-174346200	Weak transcription	HSMMtube	muscle
37	chr4:174324800-174345600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr4:174325000-174331200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr4:174325800-174341800	Weak transcription	Brain Germinal Matrix	brain
40	chr4:174327200-174331200	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr4:174327200-174331200	Weak transcription	Left Ventricle	heart
42	chr4:174327400-174333800	Weak transcription	Dnd41	blood
43	chr4:174327400-174341600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr4:174327600-174330800	Weak transcription	Brain Substantia Nigra	brain
45	chr4:174327600-174332200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr4:174327600-174332400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr4:174327800-174330200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr4:174327800-174331000	Weak transcription	Brain Anterior Caudate	brain
49	chr4:174327800-174331000	Weak transcription	Stomach Smooth Muscle	stomach
50	chr4:174328000-174331000	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links