Variant report

Variant	rs7695846
Chromosome Location	chr4:174347999-174348000
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174337554..174339082-chr4:174346381..174348146,2	K562	blood:
2	chr4:174233579..174235436-chr4:174347126..174349799,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10004826	1.00[EUR][1000 genomes]
rs10010027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10026947	1.00[EUR][1000 genomes]
rs10030028	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs13137653	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1481119	1.00[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28444875	1.00[EUR][1000 genomes]
rs28623383	1.00[EUR][1000 genomes]
rs28664683	1.00[EUR][1000 genomes]
rs28820378	1.00[EUR][1000 genomes]
rs4695834	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4696070	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4696074	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56989541	1.00[EUR][1000 genomes]
rs57940169	1.00[EUR][1000 genomes]
rs6553693	1.00[MEX][hapmap]
rs6823255	1.00[EUR][1000 genomes]
rs6848013	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6848866	1.00[EUR][1000 genomes]
rs6852086	1.00[CEU][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7655268	0.94[AFR][1000 genomes]
rs7675319	1.00[CEU][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7687292	1.00[CEU][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7690040	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461841	chr4:174330663-174423013	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv596233	chr4:174330663-174423013	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174331600-174357400	Weak transcription	Left Ventricle	heart
2	chr4:174333800-174354600	Weak transcription	Lung	lung
3	chr4:174333800-174357800	Weak transcription	Pancreas	Pancrea
4	chr4:174334000-174368800	Weak transcription	Fetal Stomach	stomach
5	chr4:174337600-174366600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:174338200-174348600	Weak transcription	Brain Substantia Nigra	brain
7	chr4:174339800-174352400	Weak transcription	Ovary	ovary
8	chr4:174341400-174354600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr4:174342000-174348400	Weak transcription	Brain Germinal Matrix	brain
10	chr4:174342200-174363400	Weak transcription	Brain Anterior Caudate	brain
11	chr4:174342200-174363800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr4:174342200-174369200	Weak transcription	Brain Angular Gyrus	brain
13	chr4:174345000-174348400	Enhancers	NHDF-Ad	bronchial
14	chr4:174345000-174348400	Enhancers	Osteobl	bone
15	chr4:174345200-174349000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:174345400-174348400	Enhancers	NHLF	lung
17	chr4:174345600-174348000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr4:174345600-174348400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr4:174345600-174348400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr4:174345800-174348400	Enhancers	Primary T cells fromperipheralblood	blood
21	chr4:174345800-174348800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr4:174346000-174348400	Enhancers	Dnd41	blood
23	chr4:174346000-174348800	Enhancers	Primary T cells from cord blood	blood
24	chr4:174346200-174348400	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr4:174346200-174348400	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr4:174346200-174348400	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr4:174346200-174348800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr4:174346400-174348000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr4:174346400-174348800	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr4:174346800-174348000	Enhancers	Thymus	Thymus
31	chr4:174346800-174348600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr4:174346800-174357200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr4:174347200-174349200	Weak transcription	Esophagus	oesophagus
34	chr4:174347600-174356800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr4:174347600-174357400	Weak transcription	Aorta	Aorta

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